HCSGD entry for OPN3
1. General information
| Official gene symbol | OPN3 |
|---|---|
| Entrez ID | 23596 |
| Gene full name | opsin 3 |
| Other gene symbols | ECPN |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004930 | G-protein coupled receptor activity | TAS | molecular_function |
| GO:0005887 | Integral component of plasma membrane | TAS | cellular_component |
| GO:0007186 | G-protein coupled receptor signaling pathway | TAS | biological_process |
| GO:0007602 | Phototransduction | NAS | biological_process |
| GO:0008020 | G-protein coupled photoreceptor activity | NAS | molecular_function |
| GO:0009583 | Detection of light stimulus | NAS | biological_process |
| GO:0009584 | Detection of visible light | NAS | biological_process |
| GO:0009881 | Photoreceptor activity | NAS | molecular_function |
| GO:0016021 | Integral component of membrane | NAS | cellular_component |
| GO:0018298 | Protein-chromophore linkage | IEA | biological_process |
| GO:0042752 | Regulation of circadian rhythm | NAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3314848106 | 0.0047636868 | 0.9999902473 | 0.1400949721 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.9865780532 |
| GSE13712_SHEAR | Down | -0.1384722126 |
| GSE13712_STATIC | Down | -0.1043165954 |
| GSE19018 | Up | 1.0676711538 |
| GSE19899_A1 | Down | -1.6428916160 |
| GSE19899_A2 | Down | -1.5259354278 |
| PubMed_21979375_A1 | Down | -1.4880201891 |
| PubMed_21979375_A2 | Down | -1.6638288979 |
| GSE35957 | Up | 0.4110698502 |
| GSE36640 | Up | 2.2217253974 |
| GSE54402 | Down | -0.7766846173 |
| GSE9593 | Up | 0.3828487909 |
| GSE43922 | Down | -0.9834476807 |
| GSE24585 | Down | -0.0913586044 |
| GSE37065 | Down | -0.2585240770 |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Down | -0.0468561128 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-183-5p | MIMAT0000261 | MIRT047044 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
