HCSGD entry for RNF144B
1. General information
| Official gene symbol | RNF144B |
|---|---|
| Entrez ID | 255488 |
| Gene full name | ring finger protein 144B |
| Other gene symbols | IBRDC2 PIR2 bA528A10.3 p53RFP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000151 | Ubiquitin ligase complex | IC | cellular_component |
| GO:0004842 | Ubiquitin-protein ligase activity | IDA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0006915 | Apoptotic process | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016874 | Ligase activity | IEA | molecular_function |
| GO:0031966 | Mitochondrial membrane | IDA | cellular_component |
| GO:0042787 | Protein ubiquitination involved in ubiquitin-dependent protein catabolic process | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0005923179 | 0.9220248357 | 0.0696488889 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0934434004 |
| GSE13712_SHEAR | Up | 1.3056736558 |
| GSE13712_STATIC | Up | 0.9350006358 |
| GSE19018 | Up | 0.6796240103 |
| GSE19899_A1 | Up | 0.0375818941 |
| GSE19899_A2 | Up | 1.1803249095 |
| PubMed_21979375_A1 | Up | 1.5309211156 |
| PubMed_21979375_A2 | Up | 0.5345720183 |
| GSE35957 | Up | 1.3065904933 |
| GSE36640 | Up | 1.0905572971 |
| GSE54402 | Up | 0.9483427373 |
| GSE9593 | Up | 0.5024766557 |
| GSE43922 | Up | 0.4980046807 |
| GSE24585 | Up | 0.4299267496 |
| GSE37065 | Up | 0.4538373784 |
| GSE28863_A1 | Down | -1.3170507276 |
| GSE28863_A2 | Down | -0.0102129206 |
| GSE28863_A3 | Up | 0.5569467399 |
| GSE28863_A4 | Down | -0.3114895662 |
| GSE48662 | Up | 0.6511723399 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-128-3p | MIMAT0000424 | MIRT022046 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022961 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027180 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031928 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
