HCSGD entry for COL6A5
1. General information
| Official gene symbol | COL6A5 |
|---|---|
| Entrez ID | 256076 |
| Gene full name | collagen, type VI, alpha 5 |
| Other gene symbols | COL29A1 VWA4 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005576 | Extracellular region | IDA TAS | cellular_component |
| GO:0005581 | Collagen | IEA | cellular_component |
| GO:0007155 | Cell adhesion | IEA | biological_process |
| GO:0022617 | Extracellular matrix disassembly | TAS | biological_process |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0030574 | Collagen catabolic process | TAS | biological_process |
| GO:0031012 | Extracellular matrix | ISS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4099321720 | 0.9251746286 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0795417620 |
| GSE13712_SHEAR | Down | -0.0238002495 |
| GSE13712_STATIC | Down | -0.0765298885 |
| GSE19018 | Up | 0.1860413106 |
| GSE19899_A1 | Up | 0.2626879852 |
| GSE19899_A2 | Up | 0.0049749608 |
| PubMed_21979375_A1 | Up | 0.1257308550 |
| PubMed_21979375_A2 | Down | -0.0104485962 |
| GSE35957 | Up | 0.0878253493 |
| GSE36640 | Up | 0.0316114015 |
| GSE54402 | Up | 0.1109570126 |
| GSE9593 | Up | 0.0934557250 |
| GSE43922 | Up | 0.0118004408 |
| GSE24585 | Up | 0.1595027455 |
| GSE37065 | Up | 0.0420868046 |
| GSE28863_A1 | Down | -0.1301736341 |
| GSE28863_A2 | Up | 0.1543964530 |
| GSE28863_A3 | Up | 0.1692698092 |
| GSE28863_A4 | Up | 0.1756307140 |
| GSE48662 | Up | 0.0226621107 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT019045 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
