HCSGD entry for YIPF3
1. General information
| Official gene symbol | YIPF3 |
|---|---|
| Entrez ID | 25844 |
| Gene full name | Yip1 domain family, member 3 |
| Other gene symbols | C6orf109 FinGER3 KLIP1 dJ337H4.3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005794 | Golgi apparatus | IDA IEA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0030133 | Transport vesicle | IDA | cellular_component |
| GO:0030154 | Cell differentiation | IEA | biological_process |
| GO:0043231 | Intracellular membrane-bounded organelle | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0125059610 | 0.9297561909 | 0.2791937235 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.8840648877 |
| GSE13712_SHEAR | Down | -0.1162404972 |
| GSE13712_STATIC | Down | -0.1377478979 |
| GSE19018 | Up | 0.3715694199 |
| GSE19899_A1 | Up | 0.5945109394 |
| GSE19899_A2 | Up | 1.2089887200 |
| PubMed_21979375_A1 | Down | -0.1111998122 |
| PubMed_21979375_A2 | Up | 1.3322385558 |
| GSE35957 | Down | -0.3045293434 |
| GSE36640 | Up | 1.0507431094 |
| GSE54402 | Up | 0.0077221816 |
| GSE9593 | Up | 0.4185535438 |
| GSE43922 | Up | 0.3705781955 |
| GSE24585 | Up | 0.5287820983 |
| GSE37065 | Down | -0.0350185134 |
| GSE28863_A1 | Up | 0.0195711642 |
| GSE28863_A2 | Up | 0.0402503559 |
| GSE28863_A3 | Down | -0.2797513512 |
| GSE28863_A4 | Down | -0.2842929086 |
| GSE48662 | Down | -0.0159869869 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-615-3p | MIMAT0003283 | MIRT039935 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041315 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052300 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
