HCSGD entry for GALNT1
1. General information
| Official gene symbol | GALNT1 |
|---|---|
| Entrez ID | 2589 |
| Gene full name | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) |
| Other gene symbols | GALNAC-T1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | TAS | cellular_component |
| GO:0004653 | Polypeptide N-acetylgalactosaminyltransferase activity | IDA IEA | molecular_function |
| GO:0005576 | Extracellular region | IEA | cellular_component |
| GO:0005794 | Golgi apparatus | IDA IEA | cellular_component |
| GO:0006493 | Protein O-linked glycosylation | IEA ISS | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016266 | O-glycan processing | TAS | biological_process |
| GO:0018242 | Protein O-linked glycosylation via serine | IDA | biological_process |
| GO:0018243 | Protein O-linked glycosylation via threonine | IDA | biological_process |
| GO:0030145 | Manganese ion binding | IDA | molecular_function |
| GO:0032580 | Golgi cisterna membrane | IEA | cellular_component |
| GO:0043687 | Post-translational protein modification | TAS | biological_process |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
| GO:0048471 | Perinuclear region of cytoplasm | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4127106721 | 0.0993495916 | 0.9999902473 | 0.6033847520 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2900713009 |
| GSE13712_SHEAR | Down | -0.0265371103 |
| GSE13712_STATIC | Down | -0.0614822917 |
| GSE19018 | Down | -0.0239772497 |
| GSE19899_A1 | Up | 0.2551527667 |
| GSE19899_A2 | Down | -0.1826497459 |
| PubMed_21979375_A1 | Up | 0.0976999764 |
| PubMed_21979375_A2 | Up | 0.1849814339 |
| GSE35957 | Down | -1.2776910995 |
| GSE36640 | Up | 0.8460112311 |
| GSE54402 | Down | -0.2550682398 |
| GSE9593 | Down | -0.0560449931 |
| GSE43922 | Up | 0.2255360058 |
| GSE24585 | Down | -0.4531366522 |
| GSE37065 | Down | -0.1489492786 |
| GSE28863_A1 | Down | -0.1432613596 |
| GSE28863_A2 | Up | 0.1420544306 |
| GSE28863_A3 | Down | -0.6626162588 |
| GSE28863_A4 | Up | 0.2146856190 |
| GSE48662 | Up | 0.3498299759 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-129-5p | MIMAT0000242 | MIRT004049 | In situ hybridization//Microarray//qRT-PCR | Functional MTI (Weak) | 19487295 |
| hsa-miR-30a-5p | MIMAT0000087 | MIRT005155 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-10a-5p | MIMAT0000253 | MIRT047573 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-129-5p | MIMAT0000242 | NA | hsa-miR-129-5p | 19487295 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
