HCSGD entry for IFT172
1. General information
| Official gene symbol | IFT172 |
|---|---|
| Entrez ID | 26160 |
| Gene full name | intraflagellar transport 172 homolog (Chlamydomonas) |
| Other gene symbols | SLB osm-1 wim |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001841 | Neural tube formation | IEA | biological_process |
| GO:0005929 | Cilium | IEA ISS | cellular_component |
| GO:0007224 | Smoothened signaling pathway | IEA | biological_process |
| GO:0007368 | Determination of left/right symmetry | IEA | biological_process |
| GO:0009953 | Dorsal/ventral pattern formation | IEA | biological_process |
| GO:0016485 | Protein processing | IEA | biological_process |
| GO:0021522 | Spinal cord motor neuron differentiation | IEA | biological_process |
| GO:0042384 | Cilium assembly | IEA ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6259370427 | 0.0715023289 | 0.9999902473 | 0.5044459561 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1477002609 |
| GSE13712_SHEAR | Down | -0.5145649183 |
| GSE13712_STATIC | Down | -0.0780260494 |
| GSE19018 | Up | 0.1738922546 |
| GSE19899_A1 | Down | -0.0552528691 |
| GSE19899_A2 | Down | -0.9564552327 |
| PubMed_21979375_A1 | Down | -0.5953102652 |
| PubMed_21979375_A2 | Down | -0.3779958026 |
| GSE35957 | Up | 0.0211780339 |
| GSE36640 | Down | -0.2413753651 |
| GSE54402 | Down | -0.1893766066 |
| GSE9593 | Up | 0.2401627262 |
| GSE43922 | Down | -0.3338765690 |
| GSE24585 | Down | -0.0676206242 |
| GSE37065 | Down | -0.2819628700 |
| GSE28863_A1 | Up | 0.7082414973 |
| GSE28863_A2 | Up | 0.6657710646 |
| GSE28863_A3 | Down | -0.1869849116 |
| GSE28863_A4 | Down | -0.0950264989 |
| GSE48662 | Up | 0.2584014749 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049558 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
