HCSGD entry for LRCH4
1. General information
| Official gene symbol | LRCH4 |
|---|---|
| Entrez ID | 4034 |
| Gene full name | leucine-rich repeats and calponin homology (CH) domain containing 4 |
| Other gene symbols | LRN LRRN1 LRRN4 PP14183 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0007399 | Nervous system development | TAS | biological_process |
| GO:0016605 | PML body | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2548585996 | 0.9290643251 | 0.9462735506 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1121050706 |
| GSE13712_SHEAR | Up | 0.0132697950 |
| GSE13712_STATIC | Down | -0.3224516464 |
| GSE19018 | Up | 0.0538852311 |
| GSE19899_A1 | Down | -0.0799474240 |
| GSE19899_A2 | Up | 0.3704484698 |
| PubMed_21979375_A1 | Up | 0.1448586848 |
| PubMed_21979375_A2 | Up | 0.4013605799 |
| GSE35957 | Down | -0.1639341449 |
| GSE36640 | Up | 0.3005388331 |
| GSE54402 | Up | 0.1704853827 |
| GSE9593 | Up | 0.0290782935 |
| GSE43922 | Up | 0.0677524709 |
| GSE24585 | Up | 0.2435662207 |
| GSE37065 | Up | 0.0686447641 |
| GSE28863_A1 | Down | -0.0471719715 |
| GSE28863_A2 | Up | 0.1198106528 |
| GSE28863_A3 | Up | 0.3345059772 |
| GSE28863_A4 | Down | -0.0160325310 |
| GSE48662 | Up | 0.2281548149 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-423-5p | MIMAT0004748 | MIRT038138 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT042268 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
