HCSGD entry for CHST6
1. General information
| Official gene symbol | CHST6 |
|---|---|
| Entrez ID | 4166 |
| Gene full name | carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 |
| Other gene symbols | MCDC1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | TAS | cellular_component |
| GO:0001517 | N-acetylglucosamine 6-O-sulfotransferase activity | IDA TAS | molecular_function |
| GO:0005794 | Golgi apparatus | TAS | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | TAS | biological_process |
| GO:0006044 | N-acetylglucosamine metabolic process | IC IDA | biological_process |
| GO:0006790 | Sulfur compound metabolic process | IDA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0018146 | Keratan sulfate biosynthetic process | IDA TAS | biological_process |
| GO:0030203 | Glycosaminoglycan metabolic process | TAS | biological_process |
| GO:0042339 | Keratan sulfate metabolic process | TAS | biological_process |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3257374150 | 0.6181744577 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0874765656 |
| GSE13712_SHEAR | Down | -0.1312480206 |
| GSE13712_STATIC | Down | -0.1549613588 |
| GSE19018 | Up | 0.1487684179 |
| GSE19899_A1 | Up | 0.2098802227 |
| GSE19899_A2 | Up | 0.0901055221 |
| PubMed_21979375_A1 | Down | -0.1882458305 |
| PubMed_21979375_A2 | Up | 0.0173842731 |
| GSE35957 | Down | -0.0762099597 |
| GSE36640 | Down | -0.2925156162 |
| GSE54402 | Up | 0.3538000911 |
| GSE9593 | Down | -0.1508452953 |
| GSE43922 | Up | 0.0237140522 |
| GSE24585 | Up | 0.1553549451 |
| GSE37065 | Up | 0.1250298734 |
| GSE28863_A1 | Up | 0.1762178425 |
| GSE28863_A2 | Down | -0.1965384066 |
| GSE28863_A3 | Up | 0.3038880700 |
| GSE28863_A4 | Up | 0.0692462712 |
| GSE48662 | Up | 0.2801559917 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017806 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022612 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-let-7c-5p | MIMAT0000064 | MIRT051817 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
