HCSGD entry for SLC35B3
1. General information
| Official gene symbol | SLC35B3 |
|---|---|
| Entrez ID | 51000 |
| Gene full name | solute carrier family 35, member B3 |
| Other gene symbols | C6orf196 PAPST2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | TAS | cellular_component |
| GO:0005739 | Mitochondrion | IEA | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | TAS | biological_process |
| GO:0006805 | Xenobiotic metabolic process | TAS | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0030203 | Glycosaminoglycan metabolic process | TAS | biological_process |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
| GO:0050427 | 3'-phosphoadenosine 5'-phosphosulfate metabolic process | TAS | biological_process |
| GO:0050428 | 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process | TAS | biological_process |
| GO:0055085 | Transmembrane transport | IEA TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8027381141 | 0.1155348581 | 0.9999902473 | 0.6512140043 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0455268805 |
| GSE13712_SHEAR | Up | 0.0147702964 |
| GSE13712_STATIC | Down | -0.0435427906 |
| GSE19018 | Down | -0.2497754530 |
| GSE19899_A1 | Down | -0.2096651067 |
| GSE19899_A2 | Down | -0.1516365252 |
| PubMed_21979375_A1 | Up | 0.2715847927 |
| PubMed_21979375_A2 | Down | -0.0512006216 |
| GSE35957 | Up | 0.1066296491 |
| GSE36640 | Up | 0.3330307411 |
| GSE54402 | Down | -0.2736588976 |
| GSE9593 | Up | 0.0614663512 |
| GSE43922 | Down | -0.0311723426 |
| GSE24585 | Up | 0.2080634864 |
| GSE37065 | Up | 0.0718597067 |
| GSE28863_A1 | Up | 0.1736099655 |
| GSE28863_A2 | Up | 0.4403606099 |
| GSE28863_A3 | Down | -0.9013978717 |
| GSE28863_A4 | Down | -0.2383050024 |
| GSE48662 | Down | -0.6372926391 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT000907 | Microarray | Functional MTI (Weak) | 18362358 |
| hsa-miR-15a-5p | MIMAT0000068 | MIRT000908 | Microarray | Functional MTI (Weak) | 18362358 |
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- mirRecord
- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-15a-5p | MIMAT0000068 | NA | hsa-miR-15a | 18362358 | |||
| hsa-miR-16-5p | MIMAT0000069 | NA | hsa-miR-16 | 18362358 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
