HCSGD entry for PHF21A
1. General information
| Official gene symbol | PHF21A |
|---|---|
| Entrez ID | 51317 |
| Gene full name | PHD finger protein 21A |
| Other gene symbols | BHC80 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000118 | Histone deacetylase complex | IDA | cellular_component |
| GO:0000122 | Negative regulation of transcription from RNA polymerase II promoter | IDA | biological_process |
| GO:0001967 | Suckling behavior | IEA | biological_process |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003682 | Chromatin binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0007596 | Blood coagulation | TAS | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016568 | Chromatin modification | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0930133734 | 0.6985436192 | 0.6395905744 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1887751314 |
| GSE13712_SHEAR | Up | 0.0307207810 |
| GSE13712_STATIC | Up | 0.0021579408 |
| GSE19018 | Up | 0.8896014300 |
| GSE19899_A1 | Up | 0.0505593418 |
| GSE19899_A2 | Up | 0.1457596224 |
| PubMed_21979375_A1 | Down | -0.6201393703 |
| PubMed_21979375_A2 | Down | -0.1140075574 |
| GSE35957 | Up | 0.0486386172 |
| GSE36640 | Up | 0.0950854430 |
| GSE54402 | Down | -0.0020486953 |
| GSE9593 | Down | -0.0510523961 |
| GSE43922 | Down | -0.1306330722 |
| GSE24585 | Up | 0.6425794712 |
| GSE37065 | Up | 0.3005096158 |
| GSE28863_A1 | Up | 0.4116609083 |
| GSE28863_A2 | Up | 0.2581412218 |
| GSE28863_A3 | Up | 0.0252068321 |
| GSE28863_A4 | Down | -0.1872867882 |
| GSE48662 | Up | 0.5397727313 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT016996 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-221-3p | MIMAT0000278 | MIRT046927 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
