HCSGD entry for RSF1
1. General information
| Official gene symbol | RSF1 |
|---|---|
| Entrez ID | 51773 |
| Gene full name | remodeling and spacing factor 1 |
| Other gene symbols | HBXAP RSF-1 XAP8 p325 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0006334 | Nucleosome assembly | IDA TAS | biological_process |
| GO:0006338 | Chromatin remodeling | IDA | biological_process |
| GO:0006352 | DNA-templated transcription, initiation | IDA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016584 | Nucleosome positioning | IDA | biological_process |
| GO:0016887 | ATPase activity | IDA | molecular_function |
| GO:0031213 | RSF complex | IPI | cellular_component |
| GO:0034080 | CENP-A containing nucleosome assembly at centromere | TAS | biological_process |
| GO:0042393 | Histone binding | IDA | molecular_function |
| GO:0043392 | Negative regulation of DNA binding | IDA | biological_process |
| GO:0045892 | Negative regulation of transcription, DNA-templated | IDA | biological_process |
| GO:0045893 | Positive regulation of transcription, DNA-templated | IDA | biological_process |
| GO:0050434 | Positive regulation of viral transcription | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0332780973 | 0.9745174879 | 0.4190870875 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1696700948 |
| GSE13712_SHEAR | Up | 0.0122475945 |
| GSE13712_STATIC | Down | -0.0486618027 |
| GSE19018 | Up | 0.2551929793 |
| GSE19899_A1 | Up | 0.3380234659 |
| GSE19899_A2 | Up | 0.3092828487 |
| PubMed_21979375_A1 | Up | 0.7017921956 |
| PubMed_21979375_A2 | Up | 0.9403267493 |
| GSE35957 | Up | 0.2983517202 |
| GSE36640 | Up | 0.4343773880 |
| GSE54402 | Up | 0.1108144936 |
| GSE9593 | Up | 0.0805759236 |
| GSE43922 | Down | -0.0660626844 |
| GSE24585 | Up | 0.4005511058 |
| GSE37065 | Up | 0.2169768624 |
| GSE28863_A1 | Up | 0.4841739381 |
| GSE28863_A2 | Up | 0.4389413160 |
| GSE28863_A3 | Up | 0.1067953184 |
| GSE28863_A4 | Up | 0.1145504546 |
| GSE48662 | Down | -0.1249565201 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-193b-3p | MIMAT0002819 | MIRT016606 | Microarray | Functional MTI (Weak) | 20304954 |
| hsa-miR-155-5p | MIMAT0000646 | MIRT020975 | Proteomics | Functional MTI (Weak) | 20209161 |
| hsa-miR-1 | MIMAT0000416 | MIRT024034 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT031001 | Microarray | Functional MTI (Weak) | 18591254 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
