HCSGD entry for KDM3B
1. General information
| Official gene symbol | KDM3B |
|---|---|
| Entrez ID | 51780 |
| Gene full name | lysine (K)-specific demethylase 3B |
| Other gene symbols | 5qNCA C5orf7 JMJD1B NET22 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0016568 | Chromatin modification | IEA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0051213 | Dioxygenase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0883648912 | 0.3547973329 | 0.6240548162 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1021839800 |
| GSE13712_SHEAR | Up | 0.4364159936 |
| GSE13712_STATIC | Down | -0.1496495063 |
| GSE19018 | Up | 0.3767286238 |
| GSE19899_A1 | Up | 0.0508129894 |
| GSE19899_A2 | Down | -0.0653231097 |
| PubMed_21979375_A1 | Down | -0.3792439206 |
| PubMed_21979375_A2 | Up | 0.9070311336 |
| GSE35957 | Down | -0.1975864369 |
| GSE36640 | Down | -0.2960269307 |
| GSE54402 | Up | 0.0005961190 |
| GSE9593 | Down | -0.0271748417 |
| GSE43922 | Up | 0.0007792575 |
| GSE24585 | Up | 0.2166878554 |
| GSE37065 | Up | 0.0888411116 |
| GSE28863_A1 | Up | 1.2461206747 |
| GSE28863_A2 | Up | 0.9553517403 |
| GSE28863_A3 | Down | -0.3327793428 |
| GSE28863_A4 | Down | -0.2337896039 |
| GSE48662 | Down | -0.3338175034 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-101-3p | MIMAT0000099 | MIRT027294 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT028029 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-935 | MIMAT0004978 | MIRT036652 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-877-3p | MIMAT0004950 | MIRT036998 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045145 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-128-3p | MIMAT0000424 | MIRT045875 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049079 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-23a-3p | MIMAT0000078 | MIRT050442 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
