HCSGD entry for VIT
1. General information
| Official gene symbol | VIT |
|---|---|
| Entrez ID | 5212 |
| Gene full name | vitrin |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005539 | Glycosaminoglycan binding | IEA | molecular_function |
| GO:0005614 | Interstitial matrix | IEA | cellular_component |
| GO:0010811 | Positive regulation of cell-substrate adhesion | IEA | biological_process |
| GO:0030198 | Extracellular matrix organization | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0579583944 | 0.3692829566 | 0.5217246580 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1761654765 |
| GSE13712_SHEAR | Up | 0.3826347049 |
| GSE13712_STATIC | Up | 0.0835531515 |
| GSE19018 | Up | 0.0379387598 |
| GSE19899_A1 | Up | 0.1039805681 |
| GSE19899_A2 | Up | 0.0564379885 |
| PubMed_21979375_A1 | Up | 0.4278114766 |
| PubMed_21979375_A2 | Up | 0.1602901568 |
| GSE35957 | Down | -0.3258720455 |
| GSE36640 | Up | 0.1870275361 |
| GSE54402 | Down | -0.0700146926 |
| GSE9593 | Up | 0.7758666501 |
| GSE43922 | Up | 0.0159187503 |
| GSE24585 | Up | 0.0292160133 |
| GSE37065 | Down | -0.0283370103 |
| GSE28863_A1 | Up | 0.6059918075 |
| GSE28863_A2 | Up | 0.5317113865 |
| GSE28863_A3 | Down | -1.5803734885 |
| GSE28863_A4 | Down | -0.1008687907 |
| GSE48662 | Up | 0.4846746598 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022689 | Microarray | Functional MTI (Weak) | 18668037 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: 1 abstracts the gene occurs.
PubMed ID of the article | Sentenece the gene occurs |
|---|---|
| 19777843 | Protein expression of p47phox, AT1R and AT2R in cells increased compared with Vit E group |
| 19777843 | Protein expression of p47phox, AT1R and AT2R in cells treated with Chinese herbs of high dose and low dose were decreased compared with Vit E group |
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