HCSGD entry for TM6SF1
1. General information
| Official gene symbol | TM6SF1 |
|---|---|
| Entrez ID | 53346 |
| Gene full name | transmembrane 6 superfamily member 1 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0008150 | Biological_process | ND | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0036014969 | 0.7054231678 | 0.1626594178 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.6546128395 |
| GSE13712_SHEAR | Up | 0.6740604981 |
| GSE13712_STATIC | Up | 0.4276920863 |
| GSE19018 | Up | 0.5625482272 |
| GSE19899_A1 | Up | 1.7755619225 |
| GSE19899_A2 | Up | 0.6797083214 |
| PubMed_21979375_A1 | Up | 0.8182713241 |
| PubMed_21979375_A2 | Up | 1.2521396221 |
| GSE35957 | Up | 0.1359836880 |
| GSE36640 | Down | -1.3487498332 |
| GSE54402 | Up | 0.2329306880 |
| GSE9593 | Down | -0.1632804833 |
| GSE43922 | Up | 0.9144578095 |
| GSE24585 | Up | 1.1847082983 |
| GSE37065 | Up | 0.0088580241 |
| GSE28863_A1 | Down | -0.1918585776 |
| GSE28863_A2 | Down | -0.2617709310 |
| GSE28863_A3 | Up | 0.0768446335 |
| GSE28863_A4 | Up | 0.4013066872 |
| GSE48662 | Down | -0.0481817166 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT001803 | Luciferase reporter assay//Reporter assay;Other | Functional MTI | 17881434 |
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- mirRecord
- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | NA | hsa-miR-155 | 17881434 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
