HCSGD entry for NUP54
1. General information
| Official gene symbol | NUP54 |
|---|---|
| Entrez ID | 53371 |
| Gene full name | nucleoporin 54kDa |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000278 | Mitotic cell cycle | TAS | biological_process |
| GO:0005487 | Nucleocytoplasmic transporter activity | IEA | molecular_function |
| GO:0005635 | Nuclear envelope | TAS | cellular_component |
| GO:0005643 | Nuclear pore | IEA | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005737 | Cytoplasm | TAS | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | TAS | biological_process |
| GO:0006605 | Protein targeting | IEA | biological_process |
| GO:0007077 | Mitotic nuclear envelope disassembly | TAS | biological_process |
| GO:0008645 | Hexose transport | TAS | biological_process |
| GO:0010827 | Regulation of glucose transport | TAS | biological_process |
| GO:0015758 | Glucose transport | TAS | biological_process |
| GO:0016032 | Viral process | TAS | biological_process |
| GO:0019221 | Cytokine-mediated signaling pathway | TAS | biological_process |
| GO:0031965 | Nuclear membrane | IEA | cellular_component |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
| GO:0051028 | MRNA transport | IEA | biological_process |
| GO:0055085 | Transmembrane transport | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9886641275 | 0.0148514722 | 0.9999902473 | 0.2396723483 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1626646799 |
| GSE13712_SHEAR | Down | -0.0945842718 |
| GSE13712_STATIC | Down | -0.0550099456 |
| GSE19018 | Down | -0.1276223494 |
| GSE19899_A1 | Down | -0.1432724077 |
| GSE19899_A2 | Down | -0.1241865505 |
| PubMed_21979375_A1 | Up | 0.0418136978 |
| PubMed_21979375_A2 | Down | -0.2781263044 |
| GSE35957 | Down | -0.2103365261 |
| GSE36640 | Down | -0.7905076522 |
| GSE54402 | Up | 0.1675154127 |
| GSE9593 | Down | -0.2044986673 |
| GSE43922 | Down | -0.3144543198 |
| GSE24585 | Up | 0.0790565747 |
| GSE37065 | Down | -0.0771214935 |
| GSE28863_A1 | Down | -0.0807967063 |
| GSE28863_A2 | Up | 0.0461937473 |
| GSE28863_A3 | Down | -1.0740425821 |
| GSE28863_A4 | Down | -0.4634896838 |
| GSE48662 | Down | -0.5890943522 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-484 | MIMAT0002174 | MIRT016625 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-24-3p | MIMAT0000080 | MIRT030464 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-24-3p | MIMAT0000080 | MIRT030464 | Microarray | Functional MTI (Weak) | 19748357 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
