HCSGD entry for RBFOX1
1. General information
| Official gene symbol | RBFOX1 |
|---|---|
| Entrez ID | 54715 |
| Gene full name | RNA binding protein, fox-1 homolog (C. elegans) 1 |
| Other gene symbols | 2BP1 A2BP1 FOX-1 FOX1 HRNBP1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA NAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005802 | Trans-Golgi network | IDA | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0008022 | Protein C-terminus binding | IPI | molecular_function |
| GO:0008380 | RNA splicing | IEA | biological_process |
| GO:0043484 | Regulation of RNA splicing | IEA | biological_process |
| GO:0050658 | RNA transport | NAS | biological_process |
| GO:0050885 | Neuromuscular process controlling balance | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8479333574 | 0.8685150108 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0748624888 |
| GSE13712_SHEAR | Up | 0.0519346023 |
| GSE13712_STATIC | Up | 0.0548531004 |
| GSE19018 | Down | -0.0532012387 |
| GSE19899_A1 | Down | -0.0834107601 |
| GSE19899_A2 | Up | 0.1392644932 |
| PubMed_21979375_A1 | Up | 0.2057480288 |
| PubMed_21979375_A2 | Down | -0.0093365889 |
| GSE35957 | Up | 0.1760028904 |
| GSE36640 | Up | 0.0448388560 |
| GSE54402 | Up | 0.0208770481 |
| GSE9593 | Up | 0.0149127543 |
| GSE43922 | Up | 0.0175623318 |
| GSE24585 | Down | -0.0147354723 |
| GSE37065 | Down | -0.0090981798 |
| GSE28863_A1 | Up | 0.0226051414 |
| GSE28863_A2 | Down | -0.0154471754 |
| GSE28863_A3 | Up | 0.1339641385 |
| GSE28863_A4 | Down | -0.0150878555 |
| GSE48662 | Down | -0.0069549695 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30a-5p | MIMAT0000087 | MIRT028610 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032440 | Proteomics | Functional MTI (Weak) | 18668040 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
