HCSGD entry for RAB39A
1. General information
| Official gene symbol | RAB39A |
|---|---|
| Entrez ID | 54734 |
| Gene full name | RAB39A, member RAS oncogene family |
| Other gene symbols | RAB39 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005525 | GTP binding | NAS | molecular_function |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0007264 | Small GTPase mediated signal transduction | IEA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0030670 | Phagocytic vesicle membrane | IEA | cellular_component |
| GO:0045335 | Phagocytic vesicle | IDA | cellular_component |
| GO:0090383 | Phagosome acidification | IMP | biological_process |
| GO:0090385 | Phagosome-lysosome fusion | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6244674063 | 0.6034521675 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1338969490 |
| GSE13712_SHEAR | Up | 0.0931017163 |
| GSE13712_STATIC | Up | 0.1334879207 |
| GSE19018 | Down | -0.0869737323 |
| GSE19899_A1 | Up | 0.1503188926 |
| GSE19899_A2 | Down | -0.0363297258 |
| PubMed_21979375_A1 | Down | -0.1497371444 |
| PubMed_21979375_A2 | Up | 0.0178405144 |
| GSE35957 | Up | 0.0778124977 |
| GSE36640 | Up | 0.0409104895 |
| GSE54402 | Up | 0.0978453949 |
| GSE9593 | Up | 0.1689159725 |
| GSE43922 | Up | 0.0133152163 |
| GSE24585 | Down | -0.1289866145 |
| GSE37065 | Down | -0.0031460620 |
| GSE28863_A1 | Down | -0.3662263171 |
| GSE28863_A2 | Down | -0.2432047514 |
| GSE28863_A3 | Up | 0.2140404628 |
| GSE28863_A4 | Up | 0.0376908043 |
| GSE48662 | Up | 0.0804261574 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
