HCSGD entry for YOD1
1. General information
| Official gene symbol | YOD1 |
|---|---|
| Entrez ID | 55432 |
| Gene full name | YOD1 deubiquitinase |
| Other gene symbols | DUBA8 OTUD2 PRO0907 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004843 | Ubiquitin-specific protease activity | IDA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0006520 | Cellular amino acid metabolic process | ISS | biological_process |
| GO:0030433 | ER-associated ubiquitin-dependent protein catabolic process | IMP | biological_process |
| GO:0030968 | Endoplasmic reticulum unfolded protein response | IMP | biological_process |
| GO:0035523 | Protein K29-linked deubiquitination | IDA | biological_process |
| GO:0035871 | Protein K11-linked deubiquitination | IDA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0070536 | Protein K63-linked deubiquitination | IDA | biological_process |
| GO:0071108 | Protein K48-linked deubiquitination | IDA | biological_process |
| GO:1990167 | Protein K27-linked deubiquitination | IDA | biological_process |
| GO:1990168 | Protein K33-linked deubiquitination | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0383912351 | 0.8917897458 | 0.4431998684 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0727981807 |
| GSE13712_SHEAR | Up | 0.2284687766 |
| GSE13712_STATIC | Down | -0.0023928090 |
| GSE19018 | Up | 0.1605848468 |
| GSE19899_A1 | Up | 0.4433644546 |
| GSE19899_A2 | Up | 0.4603890437 |
| PubMed_21979375_A1 | Up | 2.9287572046 |
| PubMed_21979375_A2 | Up | 0.8885850158 |
| GSE35957 | Up | 0.4224915506 |
| GSE36640 | Down | -0.1710957014 |
| GSE54402 | Up | 0.3095989617 |
| GSE9593 | Down | -0.1225695967 |
| GSE43922 | Up | 0.4880359979 |
| GSE24585 | Up | 0.0044354216 |
| GSE37065 | Up | 0.1475682034 |
| GSE28863_A1 | Down | -0.2216194151 |
| GSE28863_A2 | Up | 0.1860364178 |
| GSE28863_A3 | Down | -0.2761438311 |
| GSE28863_A4 | Down | -0.2308247179 |
| GSE48662 | Down | -0.1648361993 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-361-5p | MIMAT0000703 | MIRT020095 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-125a-5p | MIMAT0000443 | MIRT021311 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-30b-5p | MIMAT0000420 | MIRT023456 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-181a-5p | MIMAT0000256 | MIRT025189 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027868 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT028105 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT030163 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-24-3p | MIMAT0000080 | MIRT030622 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT031078 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT031078 | Microarray | Functional MTI (Weak) | 18591254 |
| hsa-miR-221-3p | MIMAT0000278 | MIRT046938 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-10a-5p | MIMAT0000253 | MIRT047617 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
