HCSGD entry for TSR1
1. General information
| Official gene symbol | TSR1 |
|---|---|
| Entrez ID | 55720 |
| Gene full name | TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005730 | Nucleolus | ISS | cellular_component |
| GO:0042255 | Ribosome assembly | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1329332472 | 0.2533981802 | 0.7380221894 | 0.9663454282 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2259156958 |
| GSE13712_SHEAR | Up | 0.3072348741 |
| GSE13712_STATIC | Up | 0.3050088602 |
| GSE19018 | Down | -0.5834865255 |
| GSE19899_A1 | Up | 0.2372493168 |
| GSE19899_A2 | Up | 0.3408854749 |
| PubMed_21979375_A1 | Up | 0.2252935260 |
| PubMed_21979375_A2 | Up | 0.6411732482 |
| GSE35957 | Down | -0.2426771706 |
| GSE36640 | Down | -0.4955408742 |
| GSE54402 | Up | 0.1464361766 |
| GSE9593 | Down | -0.3586726421 |
| GSE43922 | Up | 0.4248180615 |
| GSE24585 | Down | -0.8221184048 |
| GSE37065 | Down | -0.1563370111 |
| GSE28863_A1 | Up | 0.5187114217 |
| GSE28863_A2 | Up | 0.2686458771 |
| GSE28863_A3 | Up | 0.2483985858 |
| GSE28863_A4 | Up | 0.0092317683 |
| GSE48662 | Down | -0.2447757470 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-186-5p | MIMAT0000456 | MIRT021139 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-744-5p | MIMAT0004945 | MIRT037489 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-421 | MIMAT0003339 | MIRT039382 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-27b-3p | MIMAT0000419 | MIRT046234 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-23b-3p | MIMAT0000418 | MIRT046373 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-183-5p | MIMAT0000261 | MIRT047141 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049336 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT051260 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
