HCSGD entry for C1GALT1
1. General information
| Official gene symbol | C1GALT1 |
|---|---|
| Entrez ID | 56913 |
| Gene full name | core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 |
| Other gene symbols | C1GALT T-synthase |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | TAS | cellular_component |
| GO:0001525 | Angiogenesis | IEA IMP | biological_process |
| GO:0001822 | Kidney development | IMP | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0016021 | Integral component of membrane | IDA | cellular_component |
| GO:0016263 | Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity | IDA IEA | molecular_function |
| GO:0016266 | O-glycan processing | IEA TAS | biological_process |
| GO:0030154 | Cell differentiation | IEA | biological_process |
| GO:0043687 | Post-translational protein modification | TAS | biological_process |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0242530223 | 0.9093662589 | 0.3687832467 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0955125287 |
| GSE13712_SHEAR | Down | -0.0439033380 |
| GSE13712_STATIC | Up | 0.3652324397 |
| GSE19018 | Up | 0.5803306331 |
| GSE19899_A1 | Up | 0.5618203647 |
| GSE19899_A2 | Up | 0.5976333551 |
| PubMed_21979375_A1 | Down | -0.1421911545 |
| PubMed_21979375_A2 | Up | 0.2974534622 |
| GSE35957 | Up | 0.0372783270 |
| GSE36640 | Up | 0.0119419370 |
| GSE54402 | Down | -0.0369619399 |
| GSE9593 | Down | -0.0899846816 |
| GSE43922 | Up | 0.4179908935 |
| GSE24585 | Down | -0.0312920738 |
| GSE37065 | Up | 0.0834606229 |
| GSE28863_A1 | Up | 0.6998368424 |
| GSE28863_A2 | Up | 0.8411902051 |
| GSE28863_A3 | Down | -0.0944714741 |
| GSE28863_A4 | Down | -0.1194875217 |
| GSE48662 | Down | -0.0281975815 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-148b-3p | MIMAT0000759 | MIRT019301 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-375 | MIMAT0000728 | MIRT019740 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027469 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052034 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7a-5p | MIMAT0000062 | MIRT052502 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
