HCSGD entry for PRDM9
1. General information
| Official gene symbol | PRDM9 |
|---|---|
| Entrez ID | 56979 |
| Gene full name | PR domain containing 9 |
| Other gene symbols | MEISETZ MSBP3 PFM6 PRMD9 ZNF899 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005694 | Chromosome | IEA | cellular_component |
| GO:0006311 | Meiotic gene conversion | IDA | biological_process |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0010845 | Positive regulation of reciprocal meiotic recombination | IMP | biological_process |
| GO:0018024 | Histone-lysine N-methyltransferase activity | IEA | molecular_function |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8179036549 | 0.5388144637 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0039359250 |
| GSE13712_SHEAR | Up | 0.0592001831 |
| GSE13712_STATIC | Down | -0.0982837194 |
| GSE19018 | Down | -0.0035063705 |
| GSE19899_A1 | Up | 0.0142236613 |
| GSE19899_A2 | Up | 0.1592615412 |
| PubMed_21979375_A1 | Down | -0.0691152677 |
| PubMed_21979375_A2 | Down | -0.2410903462 |
| GSE35957 | Up | 0.1901106968 |
| GSE36640 | Down | -0.0670212332 |
| GSE54402 | Up | 0.0899475382 |
| GSE9593 | Up | 0.1488744117 |
| GSE43922 | Up | 0.0415434513 |
| GSE24585 | Down | -0.3726505231 |
| GSE37065 | Down | -0.0892280244 |
| GSE28863_A1 | Down | -0.1479148017 |
| GSE28863_A2 | Down | -0.2444955653 |
| GSE28863_A3 | Up | 0.2833154299 |
| GSE28863_A4 | Up | 0.0941659555 |
| GSE48662 | Up | 0.0113078293 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
