HCSGD entry for TRMT5

1. General information

Official gene symbolTRMT5
Entrez ID57570
Gene full nametRNA methyltransferase 5 homolog (S. cerevisiae)
Other gene symbolsKIAA1393 TRM5
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005634NucleusIEAcellular_component
GO:0005759Mitochondrial matrixIEAcellular_component
GO:0052906TRNA (guanine(37)-N(1))-methyltransferase activityIEAmolecular_function
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.96672446720.02582191410.99999024730.3084538113

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.1133529042
GSE13712_SHEARUp0.1151443769
GSE13712_STATICUp0.0105041423
GSE19018Down-0.0072837387
GSE19899_A1Down-1.1058058184
GSE19899_A2Down-0.8089742724
PubMed_21979375_A1Down-0.3198954558
PubMed_21979375_A2Down-0.8468865827
GSE35957Down-0.5633545535
GSE36640Down-1.1975337525
GSE54402Down-0.1550020016
GSE9593Down-0.5690587030
GSE43922Up0.0712156442
GSE24585Down-0.0112377602
GSE37065Down-0.0661933956
GSE28863_A1Up0.2547605600
GSE28863_A2Up0.2214324388
GSE28863_A3Down-0.2644371368
GSE28863_A4Up0.0033497486
GSE48662Down-0.2948177568

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-222-3pMIMAT0000279MIRT046645CLASHFunctional MTI (Weak)23622248
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.