HCSGD entry for BCL9
1. General information
| Official gene symbol | BCL9 |
|---|---|
| Entrez ID | 607 |
| Gene full name | B-cell CLL/lymphoma 9 |
| Other gene symbols | LGS |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005794 | Golgi apparatus | IEA | cellular_component |
| GO:0005801 | Cis-Golgi network | IDA | cellular_component |
| GO:0008013 | Beta-catenin binding | IEA | molecular_function |
| GO:0014908 | Myotube differentiation involved in skeletal muscle regeneration | IEA | biological_process |
| GO:0017015 | Regulation of transforming growth factor beta receptor signaling pathway | IMP | biological_process |
| GO:0035019 | Somatic stem cell maintenance | IEA | biological_process |
| GO:0035914 | Skeletal muscle cell differentiation | IEA | biological_process |
| GO:0045944 | Positive regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0060070 | Canonical Wnt signaling pathway | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7724306751 | 0.2649821359 | 0.9999902473 | 0.9867933362 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2788371669 |
| GSE13712_SHEAR | Down | -0.2328467561 |
| GSE13712_STATIC | Down | -0.1502282734 |
| GSE19018 | Down | -0.3620533799 |
| GSE19899_A1 | Down | -0.0099686939 |
| GSE19899_A2 | Down | -0.0756882628 |
| PubMed_21979375_A1 | Up | 0.8544234348 |
| PubMed_21979375_A2 | Down | -0.1911183506 |
| GSE35957 | Up | 0.1915287649 |
| GSE36640 | Down | -0.6296490039 |
| GSE54402 | Down | -0.1910897981 |
| GSE9593 | Up | 0.0475755343 |
| GSE43922 | Down | -0.1023775889 |
| GSE24585 | Up | 0.0484719797 |
| GSE37065 | Up | 0.0913608299 |
| GSE28863_A1 | Up | 0.2404763111 |
| GSE28863_A2 | Up | 0.1477708452 |
| GSE28863_A3 | Up | 0.0621759826 |
| GSE28863_A4 | Down | -0.0743046788 |
| GSE48662 | Up | 0.4661742517 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-101-3p | MIMAT0000099 | MIRT027374 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027816 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-605-5p | MIMAT0003273 | MIRT040481 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049671 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
