HCSGD entry for RPGR
1. General information
| Official gene symbol | RPGR |
|---|---|
| Entrez ID | 6103 |
| Gene full name | retinitis pigmentosa GTPase regulator |
| Other gene symbols | COD1 CORDX1 CRD PCDX RP15 RP3 XLRP3 orf15 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001750 | Photoreceptor outer segment | IDA | cellular_component |
| GO:0005085 | Guanyl-nucleotide exchange factor activity | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005794 | Golgi apparatus | ISS | cellular_component |
| GO:0005813 | Centrosome | IDA | cellular_component |
| GO:0006886 | Intracellular protein transport | TAS | biological_process |
| GO:0007601 | Visual perception | IMP | biological_process |
| GO:0036064 | Ciliary basal body | ISS | cellular_component |
| GO:0036126 | Sperm flagellum | ISS | cellular_component |
| GO:0042073 | Intraciliary transport | ISS | biological_process |
| GO:0042384 | Cilium assembly | IMP | biological_process |
| GO:0042462 | Eye photoreceptor cell development | IEA | biological_process |
| GO:0050896 | Response to stimulus | IEA | biological_process |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0349814255 | 0.2556390145 | 0.4268642096 | 0.9696684438 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0502364652 |
| GSE13712_SHEAR | Down | -0.2222534897 |
| GSE13712_STATIC | Down | -0.0994563468 |
| GSE19018 | Down | -0.2794397307 |
| GSE19899_A1 | Up | 0.2530373283 |
| GSE19899_A2 | Up | 0.9951620439 |
| PubMed_21979375_A1 | Up | 1.5495734739 |
| PubMed_21979375_A2 | Up | 1.9014791395 |
| GSE35957 | Down | -0.4611294601 |
| GSE36640 | Down | -1.0101216558 |
| GSE54402 | Up | 1.4919022328 |
| GSE9593 | Down | -0.5013915002 |
| GSE43922 | Up | 0.5047943262 |
| GSE24585 | Down | -0.3999058665 |
| GSE37065 | Up | 0.3449302896 |
| GSE28863_A1 | Down | -0.0981976678 |
| GSE28863_A2 | Down | -0.2662089774 |
| GSE28863_A3 | Down | -0.1810459808 |
| GSE28863_A4 | Up | 0.1117632925 |
| GSE48662 | Down | -0.1436273443 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT019979 | Microarray | Functional MTI (Weak) | 20215506 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
