HCSGD entry for OPN1SW
1. General information
| Official gene symbol | OPN1SW |
|---|---|
| Entrez ID | 611 |
| Gene full name | opsin 1 (cone pigments), short-wave-sensitive |
| Other gene symbols | BCP BOP CBT |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001523 | Retinoid metabolic process | TAS | biological_process |
| GO:0004872 | Receptor activity | TAS | molecular_function |
| GO:0004930 | G-protein coupled receptor activity | IEA | molecular_function |
| GO:0005887 | Integral component of plasma membrane | TAS | cellular_component |
| GO:0007165 | Signal transduction | TAS | biological_process |
| GO:0007601 | Visual perception | IEA | biological_process |
| GO:0007602 | Phototransduction | TAS | biological_process |
| GO:0007603 | Phototransduction, visible light | TAS | biological_process |
| GO:0009881 | Photoreceptor activity | IEA | molecular_function |
| GO:0018298 | Protein-chromophore linkage | IEA | biological_process |
| GO:0042622 | Photoreceptor outer segment membrane | TAS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7943304662 | 0.2722968124 | 0.9999902473 | 0.9986102675 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0102678183 |
| GSE13712_SHEAR | Down | -0.1466194259 |
| GSE13712_STATIC | Up | 0.0976425956 |
| GSE19018 | Up | 0.1473487814 |
| GSE19899_A1 | Down | -0.0934110734 |
| GSE19899_A2 | Down | -0.0699881489 |
| PubMed_21979375_A1 | Down | -0.4422094850 |
| PubMed_21979375_A2 | Up | 0.0239101667 |
| GSE35957 | Up | 0.2653293311 |
| GSE36640 | Up | 0.0467177392 |
| GSE54402 | Down | -0.2215688055 |
| GSE9593 | Up | 0.1516072780 |
| GSE43922 | Up | 0.0118275794 |
| GSE24585 | Up | 0.3010395030 |
| GSE37065 | Up | 0.0313349920 |
| GSE28863_A1 | Down | -0.0646708850 |
| GSE28863_A2 | Down | -0.1867482042 |
| GSE28863_A3 | Up | 0.0511882026 |
| GSE28863_A4 | Down | -0.6604458937 |
| GSE48662 | Up | 0.1326149336 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017141 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: 1 abstracts the gene occurs.
PubMed ID of the article | Sentenece the gene occurs |
|---|---|
| 25675863 | Proteins of the p16(INK4A)/CDK4-6/pRb pathway and telomerase activity were analyzed in 123 adult B-cell precursor (BCP) ALL cases included in the GRAALL/GRAAPH trials |
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