HCSGD entry for SALL2
1. General information
| Official gene symbol | SALL2 |
|---|---|
| Entrez ID | 6297 |
| Gene full name | sal-like 2 (Drosophila) |
| Other gene symbols | HSAL2 Sal-2 ZNF795 p150(Sal2) |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000122 | Negative regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0016581 | NuRD complex | IEA | cellular_component |
| GO:0021915 | Neural tube development | IEA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9788848372 | 0.0022447665 | 0.9999902473 | 0.0910392912 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0650529371 |
| GSE13712_SHEAR | Down | -1.3393751902 |
| GSE13712_STATIC | Down | -1.5056617062 |
| GSE19018 | Down | -0.0167061206 |
| GSE19899_A1 | Down | -0.2432611527 |
| GSE19899_A2 | Down | -1.5280374976 |
| PubMed_21979375_A1 | Down | -2.5824411904 |
| PubMed_21979375_A2 | Down | -1.1601750743 |
| GSE35957 | Down | -0.5854462989 |
| GSE36640 | Down | -2.2234260558 |
| GSE54402 | Down | -0.5426495692 |
| GSE9593 | Down | -0.0053307761 |
| GSE43922 | Down | -0.5652730314 |
| GSE24585 | Down | -0.1499811060 |
| GSE37065 | Up | 0.0632834719 |
| GSE28863_A1 | Up | 0.1999881996 |
| GSE28863_A2 | Up | 0.1034657638 |
| GSE28863_A3 | Up | 0.2236217220 |
| GSE28863_A4 | Up | 0.1260645855 |
| GSE48662 | Down | -0.2250741192 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-106b-3p | MIMAT0004672 | MIRT038599 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039723 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT042308 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-331-3p | MIMAT0000760 | MIRT043322 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-99a-5p | MIMAT0000097 | MIRT048695 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052046 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
