HCSGD entry for VPS33A
1. General information
| Official gene symbol | VPS33A |
|---|---|
| Entrez ID | 65082 |
| Gene full name | vacuolar protein sorting 33 homolog A (S. cerevisiae) |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005765 | Lysosomal membrane | IDA | cellular_component |
| GO:0005769 | Early endosome | IDA | cellular_component |
| GO:0005770 | Late endosome | IDA | cellular_component |
| GO:0006904 | Vesicle docking involved in exocytosis | IEA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016192 | Vesicle-mediated transport | IDA | biological_process |
| GO:0030220 | Platelet formation | ISS | biological_process |
| GO:0030897 | HOPS complex | IDA | cellular_component |
| GO:0031902 | Late endosome membrane | IEA | cellular_component |
| GO:0032400 | Melanosome localization | IDA | biological_process |
| GO:0032418 | Lysosome localization | IDA | biological_process |
| GO:0048070 | Regulation of developmental pigmentation | ISS | biological_process |
| GO:0048471 | Perinuclear region of cytoplasm | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5601096197 | 0.4208205729 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1229357185 |
| GSE13712_SHEAR | Up | 0.1786706658 |
| GSE13712_STATIC | Up | 0.2092385028 |
| GSE19018 | Down | -0.6626998524 |
| GSE19899_A1 | Down | -0.1295432334 |
| GSE19899_A2 | Up | 0.1425719335 |
| PubMed_21979375_A1 | Down | -0.1331049093 |
| PubMed_21979375_A2 | Up | 0.0756172401 |
| GSE35957 | Up | 0.1537411038 |
| GSE36640 | Up | 0.0967254673 |
| GSE54402 | Down | -0.1527276105 |
| GSE9593 | Up | 0.2022112147 |
| GSE43922 | Up | 0.0517548834 |
| GSE24585 | Up | 0.2852435780 |
| GSE37065 | Up | 0.0696995236 |
| GSE28863_A1 | Up | 0.0686615672 |
| GSE28863_A2 | Down | -0.0446698000 |
| GSE28863_A3 | Down | -0.6326115455 |
| GSE28863_A4 | Up | 0.0634965286 |
| GSE48662 | Down | -0.3613960482 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-98-5p | MIMAT0000096 | MIRT027508 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029192 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
