HCSGD entry for C5orf42
1. General information
| Official gene symbol | C5orf42 |
|---|---|
| Entrez ID | 65250 |
| Gene full name | chromosome 5 open reading frame 42 |
| Other gene symbols | JBTS17 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5272452224 | 0.3991436913 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0616976528 |
| GSE13712_SHEAR | Up | 0.1104274236 |
| GSE13712_STATIC | Down | -0.1869292915 |
| GSE19018 | Up | 0.0711782794 |
| GSE19899_A1 | Up | 0.0746922709 |
| GSE19899_A2 | Down | -0.3225594335 |
| PubMed_21979375_A1 | Down | -1.0231238612 |
| PubMed_21979375_A2 | Down | -0.3884319557 |
| GSE35957 | Up | 0.1620238189 |
| GSE36640 | Up | 0.2378808857 |
| GSE54402 | Down | -0.0988930944 |
| GSE9593 | Up | 0.0338499465 |
| GSE43922 | Down | -0.2085098769 |
| GSE24585 | Up | 0.4223666395 |
| GSE37065 | Up | 0.1252712903 |
| GSE28863_A1 | Up | 0.1230527521 |
| GSE28863_A2 | Up | 0.4989170247 |
| GSE28863_A3 | Down | -0.0827220738 |
| GSE28863_A4 | Down | -0.1373772692 |
| GSE48662 | Up | 0.1961730306 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049741 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
