HCSGD entry for SLC6A13

1. General information

Official gene symbolSLC6A13
Entrez ID6540
Gene full namesolute carrier family 6 (neurotransmitter transporter, GABA), member 13
Other gene symbolsGAT-2 GAT2 GAT3
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

color bar
This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005328Neurotransmitter:sodium symporter activityIEAmolecular_function
GO:0005332Gamma-aminobutyric acid:sodium symporter activityIEAmolecular_function
GO:0005886Plasma membraneTAScellular_component
GO:0005887Integral component of plasma membraneIEAcellular_component
GO:0007268Synaptic transmissionTASbiological_process
GO:0007269Neurotransmitter secretionTASbiological_process
GO:0016021Integral component of membraneIEAcellular_component
GO:0055085Transmembrane transportTASbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.02951954330.97955911250.39741768921.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.2156200144
GSE13712_SHEARDown-0.0055587457
GSE13712_STATICUp0.1032384234
GSE19018Down-0.0103369174
GSE19899_A1Up0.3682172334
GSE19899_A2Up1.3140885147
PubMed_21979375_A1Up1.9673654242
PubMed_21979375_A2Up1.0130361936
GSE35957Up0.0548548787
GSE36640Up0.7008080817
GSE54402Up0.0428474208
GSE9593Up0.1043490736
GSE43922Up0.0859389432
GSE24585Down-0.1647370391
GSE37065Down-0.0625187458
GSE28863_A1Down-0.0026649746
GSE28863_A2Down-0.0497495049
GSE28863_A3Up0.2263300787
GSE28863_A4Up0.1237694838
GSE48662Up0.0077100083

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Name

Drug

Accession number

GuvacineDB08848 -

  • MicroRNAs

    • mirTarBase
No target information from mirTarBase
    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.