HCSGD entry for SMARCE1
1. General information
| Official gene symbol | SMARCE1 |
|---|---|
| Entrez ID | 6605 |
| Gene full name | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 |
| Other gene symbols | BAF57 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000228 | Nuclear chromosome | TAS | cellular_component |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003682 | Chromatin binding | TAS | molecular_function |
| GO:0003713 | Transcription coactivator activity | NAS | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006337 | Nucleosome disassembly | IDA | biological_process |
| GO:0006338 | Chromatin remodeling | IDA | biological_process |
| GO:0006357 | Regulation of transcription from RNA polymerase II promoter | NAS | biological_process |
| GO:0007399 | Nervous system development | IEA | biological_process |
| GO:0008080 | N-acetyltransferase activity | IDA | molecular_function |
| GO:0008152 | Metabolic process | IDA | biological_process |
| GO:0016514 | SWI/SNF complex | IDA IEA | cellular_component |
| GO:0016922 | Ligand-dependent nuclear receptor binding | IPI | molecular_function |
| GO:0017053 | Transcriptional repressor complex | IPI | cellular_component |
| GO:0045892 | Negative regulation of transcription, DNA-templated | IDA | biological_process |
| GO:0047485 | Protein N-terminus binding | IPI | molecular_function |
| GO:0071564 | NpBAF complex | IEA ISS | cellular_component |
| GO:0071565 | NBAF complex | IEA ISS | cellular_component |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9900799552 | 0.0068959804 | 0.9999902473 | 0.1653088342 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1100953595 |
| GSE13712_SHEAR | Down | -0.6386357395 |
| GSE13712_STATIC | Down | -0.4646654759 |
| GSE19018 | Down | -0.6722855214 |
| GSE19899_A1 | Down | -0.6469734209 |
| GSE19899_A2 | Down | -0.9170362449 |
| PubMed_21979375_A1 | Down | -0.9984452166 |
| PubMed_21979375_A2 | Down | -1.1079616751 |
| GSE35957 | Down | -0.2459581460 |
| GSE36640 | Down | -0.0889685393 |
| GSE54402 | Down | -0.3275254992 |
| GSE9593 | Down | -0.2566521113 |
| GSE43922 | Down | -0.7498928598 |
| GSE24585 | Down | -0.2541029855 |
| GSE37065 | Down | -0.0615128055 |
| GSE28863_A1 | Up | 0.3432649180 |
| GSE28863_A2 | Down | -0.0903796098 |
| GSE28863_A3 | Down | -0.0972113436 |
| GSE28863_A4 | Up | 0.2411336865 |
| GSE48662 | Down | -0.2072751863 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020807 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027099 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029727 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-328-3p | MIMAT0000752 | MIRT043752 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-30c-5p | MIMAT0000244 | MIRT047936 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-1260b | MIMAT0015041 | MIRT052720 | CLASH | Functional MTI (Weak) | 23622248 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
