HCSGD entry for SNRPD2
1. General information
| Official gene symbol | SNRPD2 |
|---|---|
| Entrez ID | 6633 |
| Gene full name | small nuclear ribonucleoprotein D2 polypeptide 16.5kDa |
| Other gene symbols | SMD2 SNRPD1 Sm-D2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000245 | Spliceosomal complex assembly | TAS | biological_process |
| GO:0000387 | Spliceosomal snRNP assembly | IDA TAS | biological_process |
| GO:0000398 | MRNA splicing, via spliceosome | IC TAS | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005681 | Spliceosomal complex | TAS | cellular_component |
| GO:0005685 | U1 snRNP | IDA | cellular_component |
| GO:0005687 | U4 snRNP | IDA | cellular_component |
| GO:0005689 | U12-type spliceosomal complex | IDA | cellular_component |
| GO:0005829 | Cytosol | IDA TAS | cellular_component |
| GO:0008380 | RNA splicing | IEA TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0016070 | RNA metabolic process | TAS | biological_process |
| GO:0030532 | Small nuclear ribonucleoprotein complex | IEA TAS | cellular_component |
| GO:0034660 | NcRNA metabolic process | TAS | biological_process |
| GO:0034709 | Methylosome | IDA | cellular_component |
| GO:0034715 | PICln-Sm protein complex | IDA | cellular_component |
| GO:0034719 | SMN-Sm protein complex | IDA | cellular_component |
| GO:0071013 | Catalytic step 2 spliceosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9017702443 | 0.0606778732 | 0.9999902473 | 0.4637346980 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2664910299 |
| GSE13712_SHEAR | Down | -0.3086562516 |
| GSE13712_STATIC | Down | -0.1249143425 |
| GSE19018 | Up | 0.0872211220 |
| GSE19899_A1 | Down | -0.0249336158 |
| GSE19899_A2 | Down | -0.0055303368 |
| PubMed_21979375_A1 | Up | 0.1806266326 |
| PubMed_21979375_A2 | Up | 0.1482931160 |
| GSE35957 | Down | -0.7459557788 |
| GSE36640 | Down | -0.3977720194 |
| GSE54402 | Up | 0.2016461056 |
| GSE9593 | Down | -0.0932193657 |
| GSE43922 | Up | 0.0496275656 |
| GSE24585 | Down | -0.6364325244 |
| GSE37065 | Down | -0.2820915969 |
| GSE28863_A1 | Down | -0.5005376355 |
| GSE28863_A2 | Down | -0.4125419590 |
| GSE28863_A3 | Up | 0.1039873944 |
| GSE28863_A4 | Up | 0.1899574946 |
| GSE48662 | Down | -0.4929107073 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-296-3p | MIMAT0004679 | MIRT038465 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT041764 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320a | MIMAT0000510 | MIRT044703 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-149-5p | MIMAT0000450 | MIRT045600 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
