HCSGD entry for SYCP1
1. General information
| Official gene symbol | SYCP1 |
|---|---|
| Entrez ID | 6847 |
| Gene full name | synaptonemal complex protein 1 |
| Other gene symbols | CT8 HOM-TES-14 SCP1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000801 | Central element | IEA | cellular_component |
| GO:0000802 | Transverse filament | IEA | cellular_component |
| GO:0001673 | Male germ cell nucleus | IEA | cellular_component |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0007130 | Synaptonemal complex assembly | IEA ISS | biological_process |
| GO:0007131 | Reciprocal meiotic recombination | TAS | biological_process |
| GO:0007283 | Spermatogenesis | TAS | biological_process |
| GO:0032880 | Regulation of protein localization | IEA | biological_process |
| GO:0051301 | Cell division | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7154164963 | 0.8373270089 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0740532827 |
| GSE13712_SHEAR | Down | -0.1533385548 |
| GSE13712_STATIC | Down | -0.0008994259 |
| GSE19018 | Down | -0.0385507000 |
| GSE19899_A1 | Up | 0.0773447934 |
| GSE19899_A2 | Up | 0.1799690638 |
| PubMed_21979375_A1 | Up | 0.2459241438 |
| PubMed_21979375_A2 | Up | 0.2214894401 |
| GSE35957 | Down | -0.1962105862 |
| GSE36640 | Up | 0.0017533661 |
| GSE54402 | Down | -0.1591728524 |
| GSE9593 | Down | -0.0624393191 |
| GSE43922 | Up | 0.0173583427 |
| GSE24585 | Up | 0.0910452752 |
| GSE37065 | Up | 0.0410904466 |
| GSE28863_A1 | Up | 0.0493308450 |
| GSE28863_A2 | Down | -0.0227043655 |
| GSE28863_A3 | Up | 0.0608811998 |
| GSE28863_A4 | Down | -0.1300960498 |
| GSE48662 | Up | 0.0391823211 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
