HCSGD entry for TMF1
1. General information
| Official gene symbol | TMF1 |
|---|---|
| Entrez ID | 7110 |
| Gene full name | TATA element modulatory factor 1 |
| Other gene symbols | ARA160 TMF |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0001675 | Acrosome assembly | IEA | biological_process |
| GO:0001819 | Positive regulation of cytokine production | IEA | biological_process |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003712 | Transcription cofactor activity | TAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IEA | cellular_component |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0006366 | Transcription from RNA polymerase II promoter | TAS | biological_process |
| GO:0007289 | Spermatid nucleus differentiation | IEA | biological_process |
| GO:0010629 | Negative regulation of gene expression | IEA | biological_process |
| GO:0030317 | Sperm motility | IEA | biological_process |
| GO:0032275 | Luteinizing hormone secretion | IEA | biological_process |
| GO:0033327 | Leydig cell differentiation | IEA | biological_process |
| GO:0042742 | Defense response to bacterium | IEA | biological_process |
| GO:0043066 | Negative regulation of apoptotic process | IEA | biological_process |
| GO:0061136 | Regulation of proteasomal protein catabolic process | ISS | biological_process |
| GO:0071407 | Cellular response to organic cyclic compound | IEA | biological_process |
| GO:2000845 | Positive regulation of testosterone secretion | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2728232704 | 0.7369605106 | 0.9701734738 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0211263756 |
| GSE13712_SHEAR | Up | 0.0455008372 |
| GSE13712_STATIC | Up | 0.0100742938 |
| GSE19018 | Down | -0.0160705469 |
| GSE19899_A1 | Up | 0.2307074204 |
| GSE19899_A2 | Up | 0.0407692484 |
| PubMed_21979375_A1 | Up | 0.5662120619 |
| PubMed_21979375_A2 | Up | 0.5270116946 |
| GSE35957 | Down | -0.1572728066 |
| GSE36640 | Up | 0.0833210896 |
| GSE54402 | Up | 0.0575190185 |
| GSE9593 | Down | -0.1099796008 |
| GSE43922 | Up | 0.0791643499 |
| GSE24585 | Up | 0.2722372248 |
| GSE37065 | Up | 0.2261785926 |
| GSE28863_A1 | Up | 0.2325708430 |
| GSE28863_A2 | Up | 0.1684542426 |
| GSE28863_A3 | Down | -0.7824989850 |
| GSE28863_A4 | Down | -0.1768941786 |
| GSE48662 | Down | -0.2533261159 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-32-5p | MIMAT0000090 | MIRT028279 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-1914-5p | MIMAT0007889 | MIRT035780 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT041639 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-424-5p | MIMAT0001341 | MIRT042436 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-331-3p | MIMAT0000760 | MIRT043258 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-362-5p | MIMAT0000705 | MIRT044050 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT048920 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-4324 | MIMAT0016876 | MIRT052835 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
