HCSGD entry for HMGN5
1. General information
| Official gene symbol | HMGN5 |
|---|---|
| Entrez ID | 79366 |
| Gene full name | high mobility group nucleosome binding domain 5 |
| Other gene symbols | NBP-45 NSBP1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000785 | Chromatin | IEA | cellular_component |
| GO:0003682 | Chromatin binding | NAS | molecular_function |
| GO:0005634 | Nucleus | IDA NAS | cellular_component |
| GO:0005654 | Nucleoplasm | IEA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | NAS | biological_process |
| GO:0006357 | Regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0016568 | Chromatin modification | IEA | biological_process |
| GO:0031492 | Nucleosomal DNA binding | IEA | molecular_function |
| GO:0043231 | Intracellular membrane-bounded organelle | IDA | cellular_component |
| GO:0045893 | Positive regulation of transcription, DNA-templated | NAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7065462368 | 0.0715515064 | 0.9999902473 | 0.5044459561 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3453477556 |
| GSE13712_SHEAR | Down | -0.1848963781 |
| GSE13712_STATIC | Down | -0.1383063801 |
| GSE19018 | Up | 0.1386303265 |
| GSE19899_A1 | Down | -0.1036406757 |
| GSE19899_A2 | Down | -0.9560939759 |
| PubMed_21979375_A1 | Down | -0.6870652247 |
| PubMed_21979375_A2 | Down | -0.7880831812 |
| GSE35957 | Up | 0.1056478834 |
| GSE36640 | Up | 0.8568157682 |
| GSE54402 | Down | -0.6388989497 |
| GSE9593 | Down | -0.1254351609 |
| GSE43922 | Down | -0.6255098895 |
| GSE24585 | Down | -0.1135764157 |
| GSE37065 | Up | 0.4749581600 |
| GSE28863_A1 | Down | -0.0141136325 |
| GSE28863_A2 | Up | 0.0248849886 |
| GSE28863_A3 | Up | 0.0608567616 |
| GSE28863_A4 | Down | -0.0182220990 |
| GSE48662 | Down | -0.3005061716 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029263 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
