HCSGD entry for IFT88

1. General information

Official gene symbolIFT88
Entrez ID8100
Gene full nameintraflagellar transport 88 homolog (Chlamydomonas)
Other gene symbolsD13S1056E DAF19 TG737 TTC10 hTg737
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001654Eye developmentIEAbiological_process
GO:0001701In utero embryonic developmentIEAbiological_process
GO:0003382Epithelial cell morphogenesisIEAbiological_process
GO:0005814CentrioleIEA ISScellular_component
GO:0005929CiliumISScellular_component
GO:0005930AxonemeIEAcellular_component
GO:0007224Smoothened signaling pathwayIEAbiological_process
GO:0007368Determination of left/right symmetryIEAbiological_process
GO:0008104Protein localizationIEAbiological_process
GO:0009952Anterior/posterior pattern specificationIEAbiological_process
GO:0016485Protein processingIEAbiological_process
GO:0021513Spinal cord dorsal/ventral patterningIEAbiological_process
GO:0021537Telencephalon developmentIEAbiological_process
GO:0030992Intraciliary transport particle BISScellular_component
GO:0031512Motile primary ciliumIEAcellular_component
GO:0031514Motile ciliumISScellular_component
GO:0032391Photoreceptor connecting ciliumIEAcellular_component
GO:0036064Ciliary basal bodyISScellular_component
GO:0042487Regulation of odontogenesis of dentin-containing toothIEAbiological_process
GO:0042733Embryonic digit morphogenesisIEAbiological_process
GO:0045177Apical part of cellIEAcellular_component
GO:0045862Positive regulation of proteolysisIEAbiological_process
GO:0048568Embryonic organ developmentIEAbiological_process
GO:0048853Forebrain morphogenesisIEAbiological_process
GO:0060021Palate developmentIEAbiological_process
GO:0060271Cilium morphogenesisIEA ISSbiological_process
GO:0060411Cardiac septum morphogenesisIEAbiological_process
GO:0060426Lung vasculature developmentIEAbiological_process
GO:1902017Regulation of cilium assemblyISSbiological_process
GO:2000785Regulation of autophagic vacuole assemblyISSbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.55951241210.24528796400.99999024730.9535160714

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.3022022220
GSE13712_SHEARDown-0.4386027092
GSE13712_STATICDown-0.2258649298
GSE19018Down-0.3137865317
GSE19899_A1Up0.2033068860
GSE19899_A2Down-0.1351988914
PubMed_21979375_A1Up1.6109387163
PubMed_21979375_A2Up0.0703640954
GSE35957Down-0.8119586190
GSE36640Down-0.4905844385
GSE54402Up0.4677611967
GSE9593Down-0.3165761760
GSE43922Down-0.0526696619
GSE24585Down-0.0087585984
GSE37065Up0.0293650310
GSE28863_A1--
GSE28863_A2--
GSE28863_A3--
GSE28863_A4--
GSE48662Up0.0412376882

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase
No target information from mirTarBase
    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.