HCSGD entry for SYNC
1. General information
| Official gene symbol | SYNC |
|---|---|
| Entrez ID | 81493 |
| Gene full name | syncoilin, intermediate filament protein |
| Other gene symbols | SYNC1 SYNCOILIN |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005198 | Structural molecule activity | IEA | molecular_function |
| GO:0005829 | Cytosol | IEA | cellular_component |
| GO:0005882 | Intermediate filament | IEA | cellular_component |
| GO:0030018 | Z disc | IEA | cellular_component |
| GO:0031594 | Neuromuscular junction | IEA | cellular_component |
| GO:0042383 | Sarcolemma | IEA | cellular_component |
| GO:0045103 | Intermediate filament-based process | IEA | biological_process |
| GO:0048471 | Perinuclear region of cytoplasm | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9789669959 | 0.0002731773 | 0.9999902473 | 0.0303388186 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.8860985691 |
| GSE13712_SHEAR | Down | -0.9403731530 |
| GSE13712_STATIC | Down | -0.2237520617 |
| GSE19018 | Down | -0.8944397509 |
| GSE19899_A1 | Down | -2.1850546089 |
| GSE19899_A2 | Down | -0.9402208103 |
| PubMed_21979375_A1 | Down | -1.0258505069 |
| PubMed_21979375_A2 | Down | -1.0103611792 |
| GSE35957 | Up | 0.6273942336 |
| GSE36640 | Down | -0.5997118326 |
| GSE54402 | Down | -0.3886046174 |
| GSE9593 | Up | 1.2558054274 |
| GSE43922 | Down | -1.1996660790 |
| GSE24585 | Up | 0.0330150894 |
| GSE37065 | Up | 0.1561950893 |
| GSE28863_A1 | Down | -0.7873449914 |
| GSE28863_A2 | Down | -0.0897043965 |
| GSE28863_A3 | Down | -0.7068727478 |
| GSE28863_A4 | Down | -0.5214421986 |
| GSE48662 | Down | -0.6500275303 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022350 | Microarray | Functional MTI (Weak) | 18668037 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
