HCSGD entry for SNX27

1. General information

Official gene symbolSNX27
Entrez ID81609
Gene full namesorting nexin family member 27
Other gene symbolsMRT1 MY014
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001770Establishment of natural killer cell polarityTASbiological_process
GO:0001772Immunological synapseIDAcellular_component
GO:0005515Protein bindingIPImolecular_function
GO:0005634NucleusIDAcellular_component
GO:0005730NucleolusIDAcellular_component
GO:0005737CytoplasmIDAcellular_component
GO:0005769Early endosomeIDAcellular_component
GO:0005829CytosolIEAcellular_component
GO:0006886Intracellular protein transportIMPbiological_process
GO:0007165Signal transductionIEAbiological_process
GO:0008333Endosome to lysosome transportIEAbiological_process
GO:0016197Endosomal transportIMPbiological_process
GO:0030904Retromer complexIDAcellular_component
GO:0031901Early endosome membraneIEAcellular_component
GO:0032266Phosphatidylinositol-3-phosphate bindingIDAmolecular_function
GO:0071203WASH complexIDAcellular_component
GO:1990126Retrograde transport, endosome to plasma membraneIMPbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.29514385470.28592701650.99442926271.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0220393940
GSE13712_SHEARDown-0.0698607096
GSE13712_STATICDown-0.0017476241
GSE19018Up0.0913616490
GSE19899_A1Up0.0709163882
GSE19899_A2Up0.6029873858
PubMed_21979375_A1Down-0.3097245226
PubMed_21979375_A2Up1.6588963291
GSE35957Down-0.0086355493
GSE36640Down-0.0532290522
GSE54402Up0.1937749591
GSE9593Up0.2093021486
GSE43922Down-0.0329812118
GSE24585Down-0.1952198065
GSE37065Up0.1590292204
GSE28863_A1Down-0.2979939309
GSE28863_A2Up0.1139346417
GSE28863_A3Down-0.4905578306
GSE28863_A4Down-0.3233260094
GSE48662Up0.0873895005

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase
No target information from mirTarBase
    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.