HCSGD entry for HMCN1
1. General information
| Official gene symbol | HMCN1 |
|---|---|
| Entrez ID | 83872 |
| Gene full name | hemicentin 1 |
| Other gene symbols | ARMD1 FBLN6 FIBL-6 FIBL6 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005604 | Basement membrane | IEA | cellular_component |
| GO:0005938 | Cell cortex | IEA | cellular_component |
| GO:0007601 | Visual perception | IEA | biological_process |
| GO:0030054 | Cell junction | IEA | cellular_component |
| GO:0031012 | Extracellular matrix | TAS | cellular_component |
| GO:0050896 | Response to stimulus | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0418694844 | 0.0011681091 | 0.4574625311 | 0.0647926316 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.8737868616 |
| GSE13712_SHEAR | Down | -0.9229910032 |
| GSE13712_STATIC | Down | -0.8837855837 |
| GSE19018 | Up | 0.4786047753 |
| GSE19899_A1 | Down | -0.5999778922 |
| GSE19899_A2 | Down | -1.6271610717 |
| PubMed_21979375_A1 | Down | -2.1077179180 |
| PubMed_21979375_A2 | Down | -2.3409049970 |
| GSE35957 | Down | -1.0948073190 |
| GSE36640 | Up | 0.1647455833 |
| GSE54402 | Down | -0.0993896416 |
| GSE9593 | Up | 0.9467461395 |
| GSE43922 | Down | -1.0647208876 |
| GSE24585 | Up | 1.4404048852 |
| GSE37065 | Down | -0.6706950933 |
| GSE28863_A1 | Up | 1.0481442649 |
| GSE28863_A2 | Up | 2.4391232093 |
| GSE28863_A3 | Down | -0.2439458671 |
| GSE28863_A4 | Down | -0.5612198536 |
| GSE48662 | Up | 0.0732356787 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017939 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
