HCSGD entry for BARX2
1. General information
| Official gene symbol | BARX2 |
|---|---|
| Entrez ID | 8538 |
| Gene full name | BARX homeobox 2 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000122 | Negative regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0000976 | Transcription regulatory region sequence-specific DNA binding | IEA | molecular_function |
| GO:0001502 | Cartilage condensation | IEA | biological_process |
| GO:0003677 | DNA binding | IDA | molecular_function |
| GO:0003682 | Chromatin binding | IEA | molecular_function |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005667 | Transcription factor complex | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0014902 | Myotube differentiation | IEA | biological_process |
| GO:0042637 | Catagen | IEA | biological_process |
| GO:0045944 | Positive regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2429000380 | 0.9441023935 | 0.9299450036 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0380545289 |
| GSE13712_SHEAR | Up | 0.0683585817 |
| GSE13712_STATIC | Up | 0.2740972534 |
| GSE19018 | Up | 0.2663086547 |
| GSE19899_A1 | Up | 0.1429762727 |
| GSE19899_A2 | Up | 0.3121744503 |
| PubMed_21979375_A1 | Up | 0.3423962349 |
| PubMed_21979375_A2 | Up | 0.4335502758 |
| GSE35957 | Up | 0.0845039804 |
| GSE36640 | Down | -0.0779361742 |
| GSE54402 | Up | 0.0695617305 |
| GSE9593 | Up | 0.0761153780 |
| GSE43922 | Up | 0.1627161868 |
| GSE24585 | Down | -0.2554530117 |
| GSE37065 | Down | -0.0089905769 |
| GSE28863_A1 | Up | 0.0015635106 |
| GSE28863_A2 | Down | -0.1439433716 |
| GSE28863_A3 | Up | 0.2029666843 |
| GSE28863_A4 | Up | 0.0286323790 |
| GSE48662 | Up | 0.0100994294 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017365 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-769-5p | MIMAT0003886 | MIRT039194 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
