HCSGD entry for HIST1H2BJ
1. General information
| Official gene symbol | HIST1H2BJ |
|---|---|
| Entrez ID | 8970 |
| Gene full name | histone cluster 1, H2bj |
| Other gene symbols | H2B/r H2BFR H2BJ |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000786 | Nucleosome | NAS | cellular_component |
| GO:0003677 | DNA binding | NAS | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006334 | Nucleosome assembly | NAS | biological_process |
| GO:0042742 | Defense response to bacterium | IEA | biological_process |
| GO:0046982 | Protein heterodimerization activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0080816838 | 0.9682279321 | 0.2329879518 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1136405705 |
| GSE13712_SHEAR | Up | 0.7531887436 |
| GSE13712_STATIC | Down | -0.1213055306 |
| GSE19018 | Up | 0.3984856359 |
| GSE19899_A1 | Up | 0.3263028803 |
| GSE19899_A2 | Up | 1.1035115930 |
| PubMed_21979375_A1 | Up | 0.8687009055 |
| PubMed_21979375_A2 | Up | 0.1902211636 |
| GSE35957 | Down | -0.2781130300 |
| GSE36640 | Up | 1.1446990571 |
| GSE54402 | Up | 0.2500753389 |
| GSE9593 | Up | 0.2944689796 |
| GSE43922 | Up | 0.2214211428 |
| GSE24585 | Up | 0.6077742777 |
| GSE37065 | Up | 0.6882742557 |
| GSE28863_A1 | Down | -0.6271055325 |
| GSE28863_A2 | Down | -0.0321639532 |
| GSE28863_A3 | Down | -0.0585751565 |
| GSE28863_A4 | Down | -0.0077442354 |
| GSE48662 | Up | 0.5046875605 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-34a-5p | MIMAT0000255 | MIRT025460 | Proteomics | Functional MTI (Weak) | 21566225 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027525 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-320b | MIMAT0005792 | MIRT036239 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-652-3p | MIMAT0003322 | MIRT039545 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039638 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320a | MIMAT0000510 | MIRT044806 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045085 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-138-5p | MIMAT0000430 | MIRT045836 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-129-5p | MIMAT0000242 | MIRT048046 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-31-5p | MIMAT0000089 | MIRT049894 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-3176 | MIMAT0015053 | MIRT052790 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
