HCSGD entry for SYNGR1
1. General information
| Official gene symbol | SYNGR1 |
|---|---|
| Entrez ID | 9145 |
| Gene full name | synaptogyrin 1 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0006605 | Protein targeting | IEA | biological_process |
| GO:0016021 | Integral component of membrane | IEA NAS | cellular_component |
| GO:0030054 | Cell junction | IEA | cellular_component |
| GO:0030672 | Synaptic vesicle membrane | IEA | cellular_component |
| GO:0042470 | Melanosome | IEA | cellular_component |
| GO:0048169 | Regulation of long-term neuronal synaptic plasticity | ISS | biological_process |
| GO:0048172 | Regulation of short-term neuronal synaptic plasticity | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2736505908 | 0.1007746476 | 0.9702713190 | 0.6083016044 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0196863525 |
| GSE13712_SHEAR | Down | -0.2747103799 |
| GSE13712_STATIC | Down | -0.0871994549 |
| GSE19018 | Up | 0.1928474286 |
| GSE19899_A1 | Down | -0.6262681613 |
| GSE19899_A2 | Down | -0.4736151211 |
| PubMed_21979375_A1 | Down | -1.1697326523 |
| PubMed_21979375_A2 | Down | -0.6449983835 |
| GSE35957 | Up | 0.5445016330 |
| GSE36640 | Up | 1.4666447824 |
| GSE54402 | Down | -0.8333907013 |
| GSE9593 | Up | 0.4483750091 |
| GSE43922 | Down | -0.6707334784 |
| GSE24585 | Up | 0.0294796624 |
| GSE37065 | Up | 0.2284930788 |
| GSE28863_A1 | Down | -0.0237600618 |
| GSE28863_A2 | Up | 0.2303403935 |
| GSE28863_A3 | Up | 0.2646551600 |
| GSE28863_A4 | Up | 0.0542691414 |
| GSE48662 | Up | 0.3218515496 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-215-5p | MIMAT0000272 | MIRT024495 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026210 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-1301-3p | MIMAT0005797 | MIRT036022 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
