HCSGD entry for ZBED1
1. General information
| Official gene symbol | ZBED1 |
|---|---|
| Entrez ID | 9189 |
| Gene full name | zinc finger, BED-type containing 1 |
| Other gene symbols | ALTE DREF TRAMP hDREF |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000228 | Nuclear chromosome | TAS | cellular_component |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0004803 | Transposase activity | TAS | molecular_function |
| GO:0008152 | Metabolic process | TAS | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0046983 | Protein dimerization activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4444625584 | 0.5160513278 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1498394109 |
| GSE13712_SHEAR | Down | -0.0604352367 |
| GSE13712_STATIC | Down | -0.0475057775 |
| GSE19018 | Up | 0.0218782206 |
| GSE19899_A1 | Down | -0.1345150113 |
| GSE19899_A2 | Up | 0.4079160877 |
| PubMed_21979375_A1 | Up | 0.0388091716 |
| PubMed_21979375_A2 | Up | 0.7564011421 |
| GSE35957 | Down | -0.4879865855 |
| GSE36640 | Down | -0.7056737216 |
| GSE54402 | Up | 0.0956363155 |
| GSE9593 | Up | 0.0166479223 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Up | 0.3274082822 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT019734 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029074 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-24-3p | MIMAT0000080 | MIRT030435 | Microarray | Functional MTI (Weak) | 19748357 |
| hsa-miR-296-3p | MIMAT0004679 | MIRT038468 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-324-5p | MIMAT0000761 | MIRT043249 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
