HCSGD entry for HMGN3
1. General information
| Official gene symbol | HMGN3 |
|---|---|
| Entrez ID | 9324 |
| Gene full name | high mobility group nucleosomal binding domain 3 |
| Other gene symbols | PNAS-25 TRIP7 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000785 | Chromatin | IEA | cellular_component |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0008150 | Biological_process | ND | biological_process |
| GO:0016568 | Chromatin modification | IEA | biological_process |
| GO:0031492 | Nucleosomal DNA binding | IEA | molecular_function |
| GO:0045944 | Positive regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0046966 | Thyroid hormone receptor binding | NAS | molecular_function |
| GO:0051091 | Positive regulation of sequence-specific DNA binding transcription factor activity | IEA | biological_process |
| GO:0061178 | Regulation of insulin secretion involved in cellular response to glucose stimulus | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9952591011 | 0.0031933969 | 0.9999902473 | 0.1140480326 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1643657863 |
| GSE13712_SHEAR | Down | -0.8831081833 |
| GSE13712_STATIC | Down | -0.3891138678 |
| GSE19018 | Down | -0.4065019718 |
| GSE19899_A1 | Down | -1.2699267367 |
| GSE19899_A2 | Down | -1.2189627225 |
| PubMed_21979375_A1 | Down | -1.5907552031 |
| PubMed_21979375_A2 | Down | -0.7495249625 |
| GSE35957 | Down | -0.1127847876 |
| GSE36640 | Down | -0.1945015096 |
| GSE54402 | Down | -0.6013120563 |
| GSE9593 | Down | -0.8546599475 |
| GSE43922 | Down | -0.7872815736 |
| GSE24585 | Up | 0.2495315495 |
| GSE37065 | Down | -0.0249925164 |
| GSE28863_A1 | Up | 0.0223562851 |
| GSE28863_A2 | Up | 0.1236026420 |
| GSE28863_A3 | Down | -0.0061705828 |
| GSE28863_A4 | Up | 0.0071677421 |
| GSE48662 | Down | -0.4270471570 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
