HCSGD entry for VPS9D1
1. General information
| Official gene symbol | VPS9D1 |
|---|---|
| Entrez ID | 9605 |
| Gene full name | VPS9 domain containing 1 |
| Other gene symbols | ATP-BL C16orf7 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005096 | GTPase activator activity | IEA | molecular_function |
| GO:0005215 | Transporter activity | TAS | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0015986 | ATP synthesis coupled proton transport | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5497592683 | 0.2911536758 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1404885816 |
| GSE13712_SHEAR | Down | -0.2081961132 |
| GSE13712_STATIC | Down | -0.2306707721 |
| GSE19018 | Up | 0.1394529605 |
| GSE19899_A1 | Down | -0.2003275769 |
| GSE19899_A2 | Down | -0.1933643977 |
| PubMed_21979375_A1 | Down | -0.5855400521 |
| PubMed_21979375_A2 | Up | 0.5326214399 |
| GSE35957 | Down | -0.2031438556 |
| GSE36640 | Up | 0.8071239271 |
| GSE54402 | Down | -0.0321932103 |
| GSE9593 | Up | 0.0220446154 |
| GSE43922 | Down | -0.1811703339 |
| GSE24585 | Up | 0.0891628983 |
| GSE37065 | Down | -0.1842986842 |
| GSE28863_A1 | Down | -0.0803341198 |
| GSE28863_A2 | Down | -0.0818554595 |
| GSE28863_A3 | Up | 0.0426411899 |
| GSE28863_A4 | Down | -0.1234390365 |
| GSE48662 | Up | 0.4373063061 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018238 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
