HCSGD entry for SEC24D
1. General information
| Official gene symbol | SEC24D |
|---|---|
| Entrez ID | 9871 |
| Gene full name | SEC24 family, member D (S. cerevisiae) |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0002474 | Antigen processing and presentation of peptide antigen via MHC class I | TAS | biological_process |
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0005789 | Endoplasmic reticulum membrane | TAS | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006886 | Intracellular protein transport | IEA | biological_process |
| GO:0006888 | ER to Golgi vesicle-mediated transport | IEA NAS TAS | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0012507 | ER to Golgi transport vesicle membrane | TAS | cellular_component |
| GO:0018279 | Protein N-linked glycosylation via asparagine | TAS | biological_process |
| GO:0019886 | Antigen processing and presentation of exogenous peptide antigen via MHC class II | TAS | biological_process |
| GO:0030127 | COPII vesicle coat | IEA NAS | cellular_component |
| GO:0043687 | Post-translational protein modification | TAS | biological_process |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
| GO:0048208 | COPII vesicle coating | TAS | biological_process |
| GO:0048471 | Perinuclear region of cytoplasm | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7401180236 | 0.0596857908 | 0.9999902473 | 0.4598915984 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.6860005738 |
| GSE13712_SHEAR | Down | -0.0082074982 |
| GSE13712_STATIC | Up | 0.4881156435 |
| GSE19018 | Down | -0.0176922709 |
| GSE19899_A1 | Up | 0.0338485987 |
| GSE19899_A2 | Down | -0.3577267251 |
| PubMed_21979375_A1 | Down | -0.6193857955 |
| PubMed_21979375_A2 | Down | -0.7147757987 |
| GSE35957 | Down | -0.2382104082 |
| GSE36640 | Up | 0.0358676639 |
| GSE54402 | Up | 0.0334322857 |
| GSE9593 | Down | -0.3026629293 |
| GSE43922 | Down | -0.1731586421 |
| GSE24585 | Up | 0.5535609873 |
| GSE37065 | Down | -0.0767349103 |
| GSE28863_A1 | Up | 0.4586690020 |
| GSE28863_A2 | Up | 0.2839329698 |
| GSE28863_A3 | Down | -0.2008908373 |
| GSE28863_A4 | Down | -0.3063186664 |
| GSE48662 | Down | -0.6193836220 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-605-5p | MIMAT0003273 | MIRT001230 | qRT-PCR//Western blot | Functional MTI | 19336450 |
| hsa-miR-335-5p | MIMAT0000765 | MIRT016795 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022130 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024462 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026143 | Microarray | Functional MTI (Weak) | 19074876 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
